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Developmental Therapeutics Program (DTP)
Last Updated: 05/12/15

Molecular Targets Release Notes

August 2010 Release Notes

Download datasets

Molecular Targets (excluding Microarray Targets)

12845 Targets Measured (Distinct Experiment IDs)

  • 26 Activity
  • 56 DNA
  • 10913 DNA methylation
  • 352 Metabolite molecules
  • 333 Protein
  • 293 RNA
  • 866 microRNA
  • 6 Other

Estimated chromosomal band copy number extracted from spectral karyotyping.

788 Targets Measured

Microarray data from Chiron, measured on
Affymetrix U133 arrays

44920 Targets Measured

Gene assignments are based on Unigene Build #U224 (August 2010)

Microarray data from GeneLogic, measured on
Affymetrix U133 arrays

44928 Targets Measured
44928 Patterns

Gene assignments are based on Unigene Build #U224 (August 2010)

DNA copy number from Weinstein
(NCI and Gray (UCSF) labs

359 Targets Measured
359 Patterns

Affymetrix 125k SNP array data from the Sellers lab

Copy number for 125937 features
Allele calls for 125937 features

Microarray data from GeneLogic, measured on
Affymetrix U95 arrays

63175 Targets Measured
63175 Patterns

Gene assignments are based on Unigene Build #U224 (August 2010)

Microarray data — from Novartis, measured in triplicate on Affymetrix U95Av2 arrays

12626 Targets Measured
12626 Patterns

Gene assignments are based on Unigene Build #U224 (August 2010)

Microarray data — from the Weinstein (NCI) and Brown & Botstein (Stanford) groups measured on cDNA arrays

9703 Targets Measured
9703 Patterns

Gene assignments are based on Unigene Build #U224 (August 2010)

Microarray data — from Millennium Pharmaceuticals, measured on Affymetrix HUM6000 arrays

Available only as a downloadable file

7451 Targets Measured
7451 Patterns

Gene assignments are based on Unigene Build #U224 (August 2010)