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Developmental Therapeutics Program (DTP)
Last Updated: 05/29/15

MicroXeno Project

Download CEL files or CSV files for all passages grouped by cell line.

The first link in each row will download a zip archive of the raw data files (CEL files) for all passages and replicates for the indicated cell line. The zip archive includes an index file, in tab-delimited format, with annotations for the CEL files showing passage and replicate of the tumor material used for that microarray analysis. The second link in each row will download a zip archive of a CSV file which was derived from a basic analysis of the CEL files. (Simple RMA analysis using AffymetrixPowerTools) The third link in each row will download the tab-delimited index file which is included in the zip archive of the raw data files.

First Public Release

Tumor Name CEL Files ZIP Archive CSV Files ZIP Archive CEL Files Index
786-0 786-0.zip 83M 786-0.csv.zip 786-0.index.txt
A375 A375.zip 81M A375.csv.zip A375.index.txt
A549/Asc-1 A549/Asc-1.zip 72M A549/Asc-1.csv.zip A549/Asc-1.index.txt
A549 A549.zip 85M A549.csv.zip A549.index.txt
AS283 AS283.zip 79M AS283.csv.zip AS283.index.txt
AsPC-1 AsPC-1.zip 87M AsPC-1.csv.zip AsPC-1.index.txt
CA46 CA46.zip 81M CA46.csv.zip CA46.index.txt
CAKI-1 CAKI-1.zip 81M CAKI-1.csv.zip CAKI-1.index.txt
CCRF-CEM CCRF-CEM.zip 86M CCRF-CEM.csv.zip CCRF-CEM.index.txt
COLO 205 COLO 205.zip 86M COLO 205.csv.zip COLO 205.index.txt
COLO 829 COLO 829.zip 82M COLO 829.csv.zip COLO 829.index.txt
CP70 CP70.zip 83M CP70.csv.zip CP70.index.txt
EKVX EKVX.zip 80M EKVX.csv.zip EKVX.index.txt
GTL-16 GTL-16.zip 81M GTL-16.csv.zip GTL-16.index.txt
HCC-2998 HCC-2998.zip 86M HCC-2998.csv.zip HCC-2998.index.txt
HCT-116 HCT-116.zip 86M HCT-116.csv.zip HCT-116.index.txt
HCT-15 HCT-15.zip 87M HCT-15.csv.zip HCT-15.index.txt
HeLa-Luc HeLa-Luc.zip 81M HeLa-Luc.csv.zip HeLa-Luc.index.txt
HL-60(TB) HL-60(TB).zip 85M HL-60(TB).csv.zip HL-60(TB).index.txt
HOP-62 HOP-62.zip 79M HOP-62.csv.zip HOP-62.index.txt
HOP-92 HOP-92.zip 85M HOP-92.csv.zip HOP-92.index.txt
HT-29 HT-29.zip 88M HT-29.csv.zip HT-29.index.txt
HuH-7 HuH-7.zip 82M HuH-7.csv.zip HuH-7.index.txt
K-562 K-562.zip 81M K-562.csv.zip K-562.index.txt
KM12 KM12.zip 88M KM12.csv.zip KM12.index.txt
LOX IMVI LOX IMVI.zip 79M LOX IMVI.csv.zip LOX IMVI.index.txt
M14 M14.zip 80M M14.csv.zip M14.index.txt
MALME-3M MALME-3M.zip 78M MALME-3M.csv.zip MALME-3M.index.txt
MCF7 MCF7.zip 76M MCF7.csv.zip MCF7.index.txt
MDA-MB-231T MDA-MB-231T.zip 74M MDA-MB-231T.csv.zip MDA-MB-231T.index.txt
MDA-MB-435 MDA-MB-435.zip 74M MDA-MB-435.csv.zip MDA-MB-435.index.txt
MDA-N MDA-N.zip 81M MDA-N.csv.zip MDA-N.index.txt
MOLT-4 MOLT-4.zip 83M MOLT-4.csv.zip MOLT-4.index.txt
NCI-H226 NCI-H226.zip 69M NCI-H226.csv.zip NCI-H226.index.txt
NCI-H23 NCI-H23.zip 81M NCI-H23.csv.zip NCI-H23.index.txt
NCI-H460 NCI-H460.zip 86M NCI-H460.csv.zip NCI-H460.index.txt
NCI-H522 NCI-H522.zip 81M NCI-H522.csv.zip NCI-H522.index.txt
OVCAR-3 OVCAR-3.zip 83M OVCAR-3.csv.zip OVCAR-3.index.txt
OVCAR-5 OVCAR-5.zip 83M OVCAR-5.csv.zip OVCAR-5.index.txt
PC-3/M PC-3/M.zip 85M PC-3/M.csv.zip PC-3/M.index.txt
PC-3 PC-3.zip 84M PC-3.csv.zip PC-3.index.txt
RXF 393 RXF 393.zip 84M RXF 393.csv.zip RXF 393.index.txt
SF-268 SF-268.zip 35M SF-268.csv.zip SF-268.index.txt
SF-539 SF-539.zip 32M SF-539.csv.zip SF-539.index.txt
SN12C SN12C.zip 82M SN12C.csv.zip SN12C.index.txt
SR SR.zip 85M SR.csv.zip SR.index.txt
SW-620 SW-620.zip 87M SW-620.csv.zip SW-620.index.txt
U251 U251.zip 81M U251.csv.zip U251.index.txt
UACC-62 UACC-62.zip 89M UACC-62.csv.zip UACC-62.index.txt

Second Public Release: November 2015.

43 new cell line groups, 703 CEL files

Tumor Name CEL Files ZIP Archive CSV Files ZIP Archive CEL Files Index
SK-LMS-1 SK-LMS-1.zip 85M SK-LMS-1.csv.zip SK-LMS-1.index.txt
SK-MEL-5 SK-MEL-5.zip 78M SK-MEL-5.csv.zip SK-MEL-5.index.txt
T-47D T-47D.zip 71M T-47D.csv.zip T-47D.index.txt
DU-145 DU-145.zip 101M DU-145.csv.zip DU-145.index.txt
SK-OV-3 SK-OV-3.zip 79M SK-OV-3.csv.zip SK-OV-3.index.txt
NCI-H510A NCI-H510A.zip 33M NCI-H510A.csv.zip NCI-H510A.index.txt
A549-Luc-C8 A549-Luc-C8.zip 82M A549-Luc-C8.csv.zip A549-Luc-C8.index.txt
NCI-H1650-Luc-GFP NCI-H1650-Luc-GFP.zip 80M NCI-H1650-Luc-GFP.csv.zip NCI-H1650-Luc-GFP.index.txt
10.5 10.5.zip 74M 10.5.csv.zip 10.5.index.txt
SK-MEL-28 SK-MEL-28.zip 62M SK-MEL-28.csv.zip SK-MEL-28.index.txt
NCI-H441 NCI-H441.zip 80M NCI-H441.csv.zip NCI-H441.index.txt
SKRC49-Luc SKRC49-Luc.zip 83M SKRC49-Luc.csv.zip SKRC49-Luc.index.txt
SN12K1 SN12K1.zip 76M SN12K1.csv.zip SN12K1.index.txt
NCI-H1435 NCI-H1435.zip 80M NCI-H1435.csv.zip NCI-H1435.index.txt
NCI-H838 NCI-H838.zip 65M NCI-H838.csv.zip NCI-H838.index.txt
MIA-PaCa-2 MIA-PaCa-2.zip 86M MIA-PaCa-2.csv.zip MIA-PaCa-2.index.txt
MKN-45 MKN-45.zip 85M MKN-45.csv.zip MKN-45.index.txt
NCI-H1975-Luc-GFP NCI-H1975-Luc-GFP.zip 80M NCI-H1975-Luc-GFP.csv.zip NCI-H1975-Luc-GFP.index.txt
BJAB BJAB.zip 92M BJAB.csv.zip BJAB.index.txt
U-87-MG U-87-MG.zip 53M U-87-MG.csv.zip U-87-MG.index.txt
WSU-HN-31 WSU-HN-31.zip 91M WSU-HN-31.csv.zip WSU-HN-31.index.txt
A498 A498.zip 49M A498.csv.zip A498.index.txt
KD488 KD488.zip 92M KD488.csv.zip KD488.index.txt
HT-1080-Luc-2 HT-1080-Luc-2.zip 84M HT-1080-Luc-2.csv.zip HT-1080-Luc-2.index.txt
Jurkat Jurkat.zip 73M Jurkat.csv.zip Jurkat.index.txt
SJSA-1 SJSA-1.zip 87M SJSA-1.csv.zip SJSA-1.index.txt
LS-174T LS-174T.zip 152M LS-174T.csv.zip LS-174T.index.txt
NCI-H157 NCI-H157.zip 104M NCI-H157.csv.zip NCI-H157.index.txt
T-24 T-24.zip 78M T-24.csv.zip T-24.index.txt
DMS-273 DMS-273.zip 67M DMS-273.csv.zip DMS-273.index.txt
SNB-19 SNB-19.zip 76M SNB-19.csv.zip SNB-19.index.txt
NCI-ADR-RES NCI-ADR-RES.zip 75M NCI-ADR-RES.csv.zip NCI-ADR-RES.index.txt
OVCAR-8 OVCAR-8.zip 78M OVCAR-8.csv.zip OVCAR-8.index.txt
PSN-1 PSN-1.zip 79M PSN-1.csv.zip PSN-1.index.txt
IGR-OV1 IGR-OV1.zip 68M IGR-OV1.csv.zip IGR-OV1.index.txt
NCI-H1299 NCI-H1299.zip 81M NCI-H1299.csv.zip NCI-H1299.index.txt
RPMI-8226 RPMI-8226.zip 58M RPMI-8226.csv.zip RPMI-8226.index.txt
SF-295 SF-295.zip 55M SF-295.csv.zip SF-295.index.txt
LOVO-6-Luc-1 LOVO-6-Luc-1.zip 75M LOVO-6-Luc-1.csv.zip LOVO-6-Luc-1.index.txt
Daudi Daudi.zip 56M Daudi.csv.zip Daudi.index.txt
RXF-631 RXF-631.zip 81M RXF-631.csv.zip RXF-631.index.txt
NCI-H322M NCI-H322M.zip 77M NCI-H322M.csv.zip NCI-H322M.index.txt
BXPC-3-Luc2 BXPC-3-Luc2.zip 56M BXPC-3-Luc2.csv.zip BXPC-3-Luc2.index.txt

Download CEL files for all cell lines grouped by passage.

Use the first link to download a zip archive of all of the CEL files including an index which is in tab-delimited format. Text, in black, indicates the size of the zip file download. Use the second link to download only the index of the content of the zip file. The index is in tab-delimited format.

Passage ZIP Archive Index Content
P00 P00.zip 592M P00.index.txt
P01 P01.zip 1.2G P01.index.txt
P04 P04.zip 1.1G P04.index.txt
P10 P10.zip 1.1G P10.index.txt

Download CEL files for cross-hybridization experiments.

Use the first link to download a zip archive of the CEL files including an index which is in tab-delimited format. Text, in black, indicates the size of the zip file download. Use the second link to download only the index of the content of the zip file. The index is in tab-delimited format.

ZIP Archive Index Content
CrossHybridizationExperiments.zip 239M CrossHybridizationExperiments.index.txt